Scaffold Ga0153805_1000715

Overview

Basic Information

• Taxon OID: 3300012013
• Scaffold ID: Ga0153805_1000715
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7026
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010620	Metagenome	301	Y
F017298	Metagenome / Metatranscriptome	241	Y
F072337	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153805_100071512	F017298	N/A	MYLNMETNENTFIPTTFSLKRKMQWWREQSCDGDKGGSFNLELYLDYLSEQDFNEVKQEK
Ga0153805_100071514	F072337	GAG	MKKYRVWLDDSVEYEGGSWWNCYLGEDGKLHDYIYTDEHSDTLQWYIDHGYKV
Ga0153805_10007158	F010620	GAG	MRHLLPIIVLSLLFSCSDAKKAQYHYKKAIKYGLELVQDSDTIRIISVDSIPVVVNDTIVWEKIITTKDTIISFKNVYLPKTRWQTKIEYRYKTQILKQDVLKYKYIYKTEKKQKAKTNWMLLVWGFIIGVLLSFVTRLLLKLYL*