Basic Information | |
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Taxon OID | 3300012012 Open in IMG/M |
Scaffold ID | Ga0153799_1004588 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3468 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Ontario, Canada | |||||||
Coordinates | Lat. (o) | 42.581667 | Long. (o) | -79.9225 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F020494 | Metagenome / Metatranscriptome | 223 | Y |
F061542 | Metagenome | 131 | N |
F102505 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153799_10045881 | F020494 | N/A | VKVKNLSYFPSLQQRWQVQVYGYLLDKSGKGSPRTVNLVAIARDGDERDVKVHSEPYDPKLAEDALNWLSAIKESADAPGPERDQSYCKFYCKYFDESGEMGCTGLKKERIKEDEVFIDNPEVDTSALKYLQLDAKIKELTTERESLKAALEGFTGSTNSGVSITWSTVSGRESVDTEEVEKLLGFVPKKQGQESTRLSVKHTGGK* |
Ga0153799_100458810 | F061542 | AGGA | MICDLCRSGGELNKNGQFKRAVTMHKKCKEDCGCQHQTGPGVGSLAFAMAEPMRTQYPL |
Ga0153799_10045888 | F102505 | AGGA | MRKSNLNLFDGIGTWKRRPIRAGKKTYMPSHKRWGKITVTKMPTPDGVITTTEILQPIPETAPITEEENKDEVKSN* |
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