Scaffold Ga0153799_1002893

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1002893
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4536
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010463	Metagenome	303	N
F024265	Metagenome	206	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_10028935	F024265	AGTAG	MNEPFTSSEAKAKGILSDRYPGKEMLKLYAENRNQATIDMLRDAVFTLITNEIPTCTIAQVLRKTHGAIQYHLRCLEGDGKLKRRNKRCHWREAVEA*
Ga0153799_10028937	F010463	AGGCGG	MNDLVLAATIHRVKSCEDKIAQFEQLISTLTAQMAHNRSELASKGLANLVMGTTTPLDIPRELRPTFGKYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSSGRGIK*