Basic Information | |
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Taxon OID | 3300012012 Open in IMG/M |
Scaffold ID | Ga0153799_1001019 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8315 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Ontario, Canada | |||||||
Coordinates | Lat. (o) | 42.581667 | Long. (o) | -79.9225 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F040097 | Metagenome / Metatranscriptome | 162 | Y |
F043386 | Metagenome / Metatranscriptome | 156 | Y |
F054862 | Metagenome / Metatranscriptome | 139 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153799_100101922 | F054862 | GAG | MTRDQREAAKQRLWNLELRLNGINALTENMSDKGGAEIASILEETAAEIASIEKTLATKWEFLFNFIGGGWNSEVAFTKEDAIDQALFKYGHPNTQTSLRVDVTSFRVSTPTDYKNQMSTFY* |
Ga0153799_10010193 | F040097 | GAG | MKKEAKVEFGIEIVKPWSTAMYDHNEALADVVKAKVHALWVAAYEAAEAEFVDEDDLGNEFADMQWDGASSEMVEIQKAITYYSYSNQSIGEVAEEVGTTLEDMPLYQLKELVEELDIKLDTGFVGFN* |
Ga0153799_10010196 | F043386 | GAG | MTHKEFKLTVKNEILEDAGYERKAVHYRIGDVVTVDEVTFDTLQSGGTIQRYTQEGFIRFDKYDFENEVAVTTITVDYSIRKLGQRKQK* |
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