Scaffold Ga0153799_1000800

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1000800
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9550
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038206	Metagenome / Metatranscriptome	166	Y
F046328	Metagenome / Metatranscriptome	151	N
F048942	Metagenome / Metatranscriptome	147	Y
F068754	Metagenome / Metatranscriptome	124	N
F078619	Metagenome / Metatranscriptome	116	Y
F101004	Metagenome / Metatranscriptome	102	N
F101005	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100080011	F038206	AGAAGG	MFLPIVLKDKDGEYIEHLNITHITRTSFVNVMNPDAGTRIHLRTGEVLTTPVPMDIVQTEIDDCYKSAAAMIMFNILAEKAQLSKITDDVDTLGGQQPESGAL*
Ga0153799_100080013	F068754	GAG	MTPLYLGTQLDIFSKLKFMKDAKDMLKLVAAIAEEHYNITDGADGNLNYLWYMYHKGSKKDEFRPFVYMAELMLLKKYNYLNDAEIRNIVSMMKSDDRDNLAIVTLSIQNLRDLRIKEHGMYSKDNEAYKDLNHTYAFEILNHTVFMETMAEK*
Ga0153799_100080017	F078619	N/A	MSDITMCPGFECSVKERCKRFSSIPNEHWQAYFLNPPYTITDNVFKCDMFWGDTQDAIMKQLMGIVTGKDGEELPE*
Ga0153799_10008002	F046328	N/A	MGLSTKDLVNENGGGGMAKTIAPGNHTLKINSVVLEDFQFIDGAKHLILNVETEPIEGFEGFLIDKDDESKGKYKGQIGRVKASQYAFADGQTKSGIKIQRDRSLMMFLANLSKATGIMSWFEEQDNKFNTIEDFVKNFSNNAPLKDKYLDFCVAGKEYENKSGYTAYDMWLPKAENNKYAYGNEGSERILKYDEAKHLKKLEVKPVDNFGDDDDDFPTPGKTSSDFSLD*
Ga0153799_10008004	F101005	N/A	MYNRREKEKELMESHSKFLEKLKGGYQFTAKTAFYSKGKFGRQIQFFENELNKGTDIYVELVDIERDARGAETNMVPMFWERPLFKYRYNPYFKEEYEVKTSTNSRGEEYSAYVIPTSELVCVNKGSEEIPYNSYETQRTEEPKEQKKLSVFPDFEEEFVPKLKTQETDDDISSILLQIAEGFQKLAQKFK*
Ga0153799_10008006	F101004	N/A	MEDIFSKFVKEGITPNSYYVLQCIKNKVVPYSFINKELETKRLINDGWLKDDLTLTDKSIIFTTEIDGFFKKSKKKTSKNLLGDNFEDNIKKYSNIFPSIKLSSGKYARSNPKNLENALRWFFETYDYDWETVLLAAKKYVLEYREISYQYMRTSQYFIRKQNSDKTWDSDLADYCEMIINKPDDEIIFIKERLF*
Ga0153799_10008008	F048942	N/A	MAIKVKELKDDAQINITVNKSFYLMAKAASFTILNSLNVNHKGDAYFKELMTKNYEDLNDTERAFYTIILLLAEIEKQATENKLYMEKEILEPTDPGFVEPKQD*