Scaffold Ga0120152_1131913

Overview

Basic Information

• Taxon OID: 3300012011
• Scaffold ID: Ga0120152_1131913
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 677
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F007262	Metagenome / Metatranscriptome	354	Y
F090360	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120152_11319131	F007262	N/A	QYRTTRQKPRIYSVDDWSGFTSELAGPSTLFFLLLTVILTGFAVALIVGHIVDGQIF*
Ga0120152_11319132	F090360	N/A	MAAAPPFVSYSTMSEATVPASEWSYLYGSLQAYKAHVQEYPGCQKMELFAAIDDDGAMRIHCYTVWDTPEQLEVFLEIGYTFERLLADLDLAGAERSLVMEKLF*
Ga0120152_11319133	F000280	GGAG	MARRRMPARPLAGYRDVGPDVRHSRRNHARAWIILAFLVAIYLGWTLTVYFLEPGLR*