NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120152_1019307

Scaffold Ga0120152_1019307


Overview

Basic Information
Taxon OID3300012011 Open in IMG/M
Scaffold IDGa0120152_1019307 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A30_65cm_6M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2603
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011415Metagenome / Metatranscriptome291N
F033128Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0120152_10193074F033128N/AMRLWPPARLPLAALAVVALWPIAANAEAPGNDGGTVNVGPVSNGPVVSQGSAGYDPSGINATAATRPTGSGTNPNSLPDYTYRPVPYNSIPAPIQNNNGTLSNPNVGLSLPACPAGQTGYFVYDSNGNSLGIVCVPNPTDSLLPPTTPEIALADQASSKQPWPTLVMGINPGTGLTGLPSWFWLGGGSAAMPDAAASSGPLTVRVRARLVGVSWEFGDGIGYDSIDLGQAYPA*
Ga0120152_10193075F011415AGGMLTRPAGARGLHVREAVLGSWARTGLAAALVLVILGGIAVLGATGRLGDLRYANIPVIHPWPPAGYFQNPFNPADRGDLVNASDAAKVKGDLVADGQVELRAYQTSDGSLLPGADTGNRLAKLRSALDQNHAAGVFEDFKNQLTTVRVGKLVDPNDSSVTWCIEEIGTSRITLTKAADGSVLQQFSIRFDDKFWMKSVAGRYLITDAEVHSVTTS*
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Institute for Fundamental Biomedical Research
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