Scaffold Ga0120152_1000123

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120152_1000123

Scaffold Ga0120152_1000123

Overview

Basic Information
Taxon OID	3300012011 Open in IMG/M
Scaffold ID	Ga0120152_1000123 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	33211
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (61.11%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Axel Heiberg Island, Nunavut
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.65
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025110	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120152_100012334	F025110	N/A	VTTSPTSHPEADLKVHRLQPLRVLLSGRDRRFLRVTSFLLSQRGYDVTQTSPRETLKTVEQHRSDVVLLETDASRAMAARKIASLQALAVAPSVLVVVEGDDDEHERWQGLPAVKKWTPIDTLVDMIEAAARNRPVPLTEIERAYL*

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