Scaffold Ga0120118_1002852

Overview

Basic Information

• Taxon OID: 3300012010
• Scaffold ID: Ga0120118_1002852
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5722
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041448	Metagenome / Metatranscriptome	160	N
F085451	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120118_10028522	F085451	AGCAG	VSVVVGLLLIGLSVLNVPLTDAYRPYFLYAGIGLLLLGLVLFIARRPRDETPASRDVEPAAHVAVLEPAAPIAPPRAEVTLLVGRNGASEPSRRWYHAAAATTNGVAAPKARLSVAVRGEQVGAEWRWQTGDRDVDLTQVGAGIPIVIGGVSESAEPIGSGWVVPFKNWYLTPNAISALGPFLAPFIAGVRHVFDVSVSWDERGIAQSSSASFELRFWREPTSEPRFIRIGDRPAYRDQVGGLGEMRDRGTALRKEGMMLPLPALNVWLGRVDSWTSETRALLAEVSTADSDYFWALKNFDAPLFEGVRLHDDRHRKALRELHERLARLQLFMRPGRT*
Ga0120118_10028523	F041448	GGAG	MTRNTASVTVKLVGGPLNGKSAVAYGAIVGSLLDVNRSKYRVTKVDSIPGWNEQIASATYIVPKPVVPKVVIAKPLAVKPK*