Scaffold Ga0119955_1037213

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119955_1037213

Scaffold Ga0119955_1037213

Overview

Basic Information
Taxon OID	3300012006 Open in IMG/M
Scaffold ID	Ga0119955_1037213 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1581
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023835	Metagenome / Metatranscriptome	208	N
F105077	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10372133	F023835	N/A	MAFNKPRTLQGEIAALEREVDQHRRDMAEIEGNDGVAHGNVSDWLITSGRTLIDKGDELLSLLTLDPDFSKHRDAFMRELKTFRKFYKKWSDKNSD*
Ga0119955_10372135	F105077	N/A	MTKQKSKKQLTDAEYLEIFENFDPAKWRELTPEELAEHRERAKDAVLVEIKEIDPAN*

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