Scaffold Ga0119955_1035138

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1035138
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1641
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031360	Metagenome	182	Y
F078407	Metagenome	116	N
F088778	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10351382	F031360	GAGG	MNEIKLSTNLVNAILQYLGSRPYAEVFQLVEAIQKEAKENNEAIQTSNDAS*
Ga0119955_10351384	F088778	GAGG	MMGVLGWIAAVVLVALMLPMLAFLYLDVLETKAEAKAQMEKIEKLRREVERKNRDKEPVNFDDNPVFDRVRRPLSLSVPRPEKLE*
Ga0119955_10351385	F078407	GGAG	MPTIVRNTSSRLTAEEIEVRVWAFVIVVLVTILLGAMAMFLYSVTYVTQPMSG