Scaffold Ga0119955_1023520

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1023520
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2116
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034567	Metagenome / Metatranscriptome	174	Y
F058818	Metagenome / Metatranscriptome	134	N
F082590	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10235201	F082590	N/A	MTERKLFSDTITEEQYNKLTHLNYVRKPDHPDEIYSSINFRDLDRSIIEIVASLPVVEFPGSFFDYFLNGDQQFYLVTYKEKVFLVDTQGYDYARYVIQLKDLVLFEKEETQQMKAHPGMAEEIIGMLKHMEVDGETMEHIIRSVGMEEQMLRQLFLGAHSDVLLDLSLEKLELEKSI*
Ga0119955_10235202	F034567	GGAG	LRNLFNYYDYVNHYGNRMFAIAGVNAMPARYCSILFTGSYEECMERLDPKGLEGSVEDICQRVAFPK*
Ga0119955_10235203	F058818	N/A	MIKELLEKQELLGEIAAELYGDLWIMNEKFWGSPTERELEEVTMSLMNLGYTVEPTPEQEEAAKIIAKKFGFELPPED*