Scaffold Ga0119955_1006149

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1006149
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4955
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016150	Metagenome / Metatranscriptome	249	Y
F058149	Metagenome / Metatranscriptome	135	N
F077308	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100614912	F077308	N/A	MFHIKRFIDRVASIESRQGKDVVIPLTDARGLRDELAKLLVDHYEITDGKKNTSEVIEIEVIGGKF*
Ga0119955_10061493	F058149	N/A	MGIIMFTPDFYIEMFQSSKRVATNQIFKDERLNKVANDFIDAQTVFAKMLAKNTIEMLSYSVDSVSKVMYPHGEDETVKAKTAKK*
Ga0119955_10061499	F016150	GAGG	MTEEKKKNPIAMALEAKKKNALLNPGLGKAPKSQGPKANTKGFGGASVTRRAGRGG*