Scaffold Ga0119955_1000662

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1000662
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18424
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (70.27%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029419	Metagenome / Metatranscriptome	188	Y
F035302	Metagenome	172	Y
F036680	Metagenome	169	Y
F039535	Metagenome / Metatranscriptome	163	Y
F049622	Metagenome	146	Y
F074589	Metagenome / Metatranscriptome	119	N
F082668	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100066212	F036680	AGGAG	MKITKHSLDHIELVSSGDTALFEVRLVVAMTDWSDDEAEAGFDEIGALSWLMNLLHLASQGEDIQTGAQEFLKSMMTLNEERVHLCKVEKIQYNIDEIGEEK*
Ga0119955_100066216	F039535	GAGG	LRHYLSRTEQRKQKTYSRVQKEDKVIGVTVKKIVALCVVSLIGLASVADAASAPQKVERYQMAQHPFDFVPATKRSVPAWAKCPELWDKLRDAGWLEKDVVKADQIVWRESRCNPLAHNKQDPNTVAGVKGSLGLFQINLFWIQRTTYYPKGYLQTVLNRELMPADLFDVDITVSAAQALIVYDRAQGGCGWSAWLGC*
Ga0119955_100066217	F074589	AGGAGG	MTPAQIEGFIDRICGIYPSQQVSLAKAKHAWTADDFLLLQDVNDARKVVPLIMEHHDKFPSLKDVHKAFALLRKPATEQTVVVCEICDGNGWDNGRRWNYNAKELICEGFTKTVMGRTYTYVVPCKCREFSKA*
Ga0119955_100066219	F029419	GAG	MTMMSDDRKGECQGNRDKCNLKDCPKFGTLGRPARDGNRRVKGCSDPTARGKRSRTKGLSKQRTARKRLGVAPSHKFGDGNEERWQDVLFANEVKAGKQIGAAVTAWLRIEAQVRSNEADYGSRRKPTRAILMPDDWGSEGLVMIRLSTWEELVRPAMHEYYEGGQ*
Ga0119955_100066233	F082668	N/A	MSDAFATIIVALISTIGVIIVGLMQLFKKEAREAAIENRQDHAIVQQQLRMIFKSVNRVDDKLDKHLTDHEEGTNGKVARRN*
Ga0119955_100066234	F035302	N/A	MKRPYTGNKDGLAEGERKGLKVFITELTKLYPALWNNGSFVNRSMRGKKDSLSVHATGRAVDLSFRYMAKEKRGIPEGGRKQAMEAIDFVVKNADAFGLECILDYFPMPHGRGWRCDRASWNIYTKPEIHGAPMGDWVHFEISPAMADNPDAMREAFAQAVKPVA*
Ga0119955_100066235	F049622	AGGA	MKKAQDIAQRLLSLFMANALAIVTGSAIVGGIPVWKAAALAGFTAVAQVAERLAKASVDGSLTAQEISDAFGGNGKPIAKKRSAK*