Scaffold Ga0120163_1034935

Overview

Basic Information

• Taxon OID: 3300012003
• Scaffold ID: Ga0120163_1034935
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1323
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005628	Metagenome / Metatranscriptome	394	Y
F021782	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120163_10349351	F021782	N/A	ERGLSERDALVRVAREAGEPTLTRFCELLAVKESPYLDFLRQQAREARAEQARYLERAADRAYLAMHAPLAPLLAVLVLLLAYGFLRFLAHTV*
Ga0120163_10349352	F005628	AGGAG	MIDALWFRLLGWAERIRREERGDGLVNWVVLAVGLAAAAVAVVAILRPALENAAQNIANFISGG*