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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012000 Open in IMG/M |
| Scaffold ID | Ga0119951_1012440 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Institute of Technology |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3386 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003965 | Metagenome / Metatranscriptome | 459 | Y |
| F011386 | Metagenome / Metatranscriptome | 291 | Y |
| F012455 | Metagenome / Metatranscriptome | 280 | Y |
| F029439 | Metagenome / Metatranscriptome | 188 | Y |
| F084151 | Metagenome / Metatranscriptome | 112 | Y |
| F093770 | Metagenome / Metatranscriptome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0119951_10124401 | F011386 | GAGG | MKVTITSMQGNTRDINLMSKEEVLEFINLYRSTLKKNQRVKVTCDLVGIDGYLQGVA* |
| Ga0119951_101244012 | F093770 | GGAG | MITLKHSINLVTEIDENKMPDNLLTAFLNLSELEMEKMLRGAFINALEVKNFLDEINKDNTWAVLKVGEN* |
| Ga0119951_10124402 | F084151 | AGGAG | MTITYSIWQGSNLLSINNIATNIKDVDKVIAELNTSDVANKVKFSANIMKVEVTK* |
| Ga0119951_10124403 | F029439 | AGG | MTTLNTITLEPNHVMASSNTGNPMVFRNTVGNYISRKAYLEMLATSQGVISHRYLSPNESRWVMNNKKESI* |
| Ga0119951_10124405 | F003965 | AGGA | MNSTIITVCKKHTPNKIAISEVGDNQYTFCEVCESNIERWYNDTDPERLPMWTDWFVSN* |
| Ga0119951_10124407 | F012455 | N/A | MLKEIKNKIIRIQELRRSNAATAIPSKKKYTRKIKHKNKLQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |