Scaffold Ga0119951_1008821

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1008821
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4315
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F035287	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10088215	F035287	N/A	MGVKIPPKKKKGIQKIGRVAGVQAAMMLLEKPYKATQLAEALGMHIRITYRIIDDLRATGHLYSHRCYYWFDPKKNNDLQHLIPLKDPFA*
Ga0119951_10088216	F001981	N/A	MTYLPIITIPKADICKAEIAQIAQQLTDRINDGEVNPIEAHIKLKAIVKACEVAIKQTEQTVADEASKHGKTFQAFGAEVTLKEGSLTPNYEEDAVYADIKAQLKAREELLKIAFRQAGKTAIFDETTGEQIPVCTAKGTKSSIAVSFK*