Basic Information | |
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Taxon OID | 3300012000 Open in IMG/M |
Scaffold ID | Ga0119951_1001615 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13112 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (52.27%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F024040 | Metagenome / Metatranscriptome | 207 | Y |
F039497 | Metagenome / Metatranscriptome | 163 | N |
F048123 | Metagenome / Metatranscriptome | 148 | Y |
F049419 | Metagenome / Metatranscriptome | 146 | Y |
F062446 | Metagenome / Metatranscriptome | 130 | Y |
F064403 | Metagenome / Metatranscriptome | 128 | N |
F082149 | Metagenome / Metatranscriptome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0119951_100161514 | F048123 | GGAG | MKPRYDFNKGKLISYDGEIIEFAETKAIDKYADQVQEIMALFNLKKGEYILTDESTIGHFGKETINKILLEKFKKKYGFSLTNKSNISKIAERMYNFRPF* |
Ga0119951_10016152 | F082149 | AGG | MKLGLHIDWCVGRWFGRDNNLEINVCLPTISLGYKNEDNDKWFGFKFNLKTDISFESYEYGKIFSLIILGFGVKLSKFNL* |
Ga0119951_100161524 | F064403 | GGAG | MNNPRSKILSDLKKAYLKEHPATLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF* |
Ga0119951_100161529 | F049419 | GGA | MNKKIDWLNLATTYLFFGIVYGTIITLSWNYLFEPTFNIHLSILQGFGIHLICRILFGNTNTNYISNFYSQKAPDLDKIDSYLKEFQEQLDKESEEVEKQYQDLDKKD* |
Ga0119951_10016153 | F039497 | N/A | MSEEDNFNSEAGNQLRDMLYKDIVRYAQESDMTAYQAIGVLESLKFDLLNAMRNATREDEDEI* |
Ga0119951_100161540 | F062446 | N/A | MTFNPIKIIAFMVILLAWILMTFFFIGCANSSYHTIPNAMCEDSQNYSTKYNMMDSQDGSKNPNAQADILNIKY* |
Ga0119951_10016159 | F024040 | GAGG | MNIYVTGHNWLAKVDIDTKTIDKTDWYNEACTRAVESVLDQEEKEGVELKIQDYDDFGLGVILLTYLEKDIKKEGEHRVLLTSNVLANAGRWEEYKFVKDYEEKCKEDGL* |
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