Scaffold Ga0120114_1000090

Overview

Basic Information

• Taxon OID: 3300011998
• Scaffold ID: Ga0120114_1000090
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32129
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (52.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027368	Metagenome	195	N
F104796	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120114_100009021	F027368	N/A	MATVAERWRPRPFAAWALHANTFWGLVCVPIAMVFSTASAYRLSQTVHVDDIVFGPTRSAIVDTLLLAIGVERTAVLVYVLQRSFDALVIAAALTPIFLWLLGSSAIHAAARFRGVRGRPYRPLLVLFGYAELVYQLPTSLAGIVFAGGPLTPIADVISVVMLVWIAFVVHRAIELHYGVSGDQATAIFLLGGLAFYLLPLILIGILLVAIVVAAAILQYF*
Ga0120114_100009031	F104796	AGAAGG	MDNDDVPANNDKVDGDTGGESWLAEQARLILLEDGS*