Scaffold Ga0120153_1006626

Overview

Basic Information

• Taxon OID: 3300011991
• Scaffold ID: Ga0120153_1006626
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3478
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085971	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0120153_10066267	F085971	N/A	MLIRLEQSFVESAEKLNDRFSEQDREELSQAIGANYEKIRSIMLEQEKSKDKSKSTLLELGNIGSRFFGFNIYYNDDVDDVPISIRELIPTISPVRLDLMATTKKTKLADPNSTYLKAARVYDDGSIKAKYYAEAIREDEGIRPP*