Scaffold Ga0119931_1000584

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119931_1000584

Scaffold Ga0119931_1000584

Overview

Basic Information
Taxon OID	3300011984 Open in IMG/M
Scaffold ID	Ga0119931_1000584 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4070
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F018171	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119931_10005841	F005024	GAGG	MEVDTSRFDAALKQYLLTTRRDLHKAINARFFYLMVRLFVLVPPRSPGQERRRISDYLGKPLGDINRKSKKTGKRIGRSRLLRRVHLIVQAKEAKAGRRGLYGEEMKTMASAFMRKSIASVGYLRSAVVKAIRVYNKGFTQFQAQKWKPLVKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTRARGFQAVPGYNPTATIVMTAGIADNQYNRVAGIYNPAMQRALDDETAELANHMTEALLANGKVLEDNGFDIK*
Ga0119931_10005842	F006107	N/A	MNAVALRAEKAVADYLAAADWSSSGTGTPTCLTSYSRGLYDDPDLQDTMPNFPRIIVSSNSARPVQRTDLTCEVEVEVELQLSADDTDEVDALSTVRVLDNRILPLFDDTGASALDAAANDDNGPFTAQFAAPLDFGASSISNRSRTFTRTFSLYCSATT*
Ga0119931_10005843	F018171	N/A	MANSQGRVYRFGSPATLALYNSAGNLVVTLYTSPDMESYDLTHEADTEEVRNSSGEVVGHITYNNRLTLTVNFIPAGANAADALKAMASPDANGTCVITGAPAVQCGPYEDAINAPGSPGTGPGGRWIYAGGASLKFTQTGKVTGTITLKRYAGMGTTVTGAAIGL*

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