Scaffold Ga0119931_1000236

Overview

Basic Information

• Taxon OID: 3300011984
• Scaffold ID: Ga0119931_1000236
• Source Dataset Name: Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6721
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033771	Metagenome	176	N
F067885	Metagenome	125	N
F090300	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119931_10002361	F033771	GGAG	MSILNKITVDQFQRIVSIEANSIYTTSDKKIGVIAVLDNLPIEQVKKMTIAEVNKRYGEINAASKSLSSLAANRHAKVAGKWYRFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYAAFFLQLSEPLLTIMRKSLTDQQKTTTTAKG*
Ga0119931_100023610	F090300	N/A	MNRYNVLPAWYYRYAKCKPLTCLTCLAFWWGVVLTITASNLHWLLAIPVGLSAAGLTCVTIKLTEK*
Ga0119931_10002369	F067885	N/A	MTLDEALQVLSVKHKLDGYYASQTMSLSPGEVSMLENVANANGYGRTNWWCGSCAVSRLQEMMADAQESRARLSTE*