Scaffold Ga0120090_100071

Overview

Basic Information

• Taxon OID: 3300011918
• Scaffold ID: Ga0120090_100071
• Source Dataset Name: Mine pit pond microbial communities from Vermont, USA - 2S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Vermont
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37052
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (82.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location

• Location Name: USA: Vermont
• Coordinates
  • Lat. (^o): 43.727094
  • Long. (^o): -72.425964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F003539	Metagenome / Metatranscriptome	480	Y
F003658	Metagenome	474	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120090_10007146	F003539	GGA	MNYIEEYNDLVQTLAAEYSRKYSMIERDDIGQELWVWFAGHPRKYKEWSALEQKDRDKLIAKSLRNAALKFCEREKAKKVGYDMSELYYYDVSVVEAFLPTIIAESYEMPSKIKDLGNSVKSSELSDGMNWLVLRSDIATAYYKLSEAKQNILRLRFSMEQPDWATLAKEMDSTPDGARMKVQRALNSLVKHLGGWRPYNDEDTKEETTEHAEENAINAQAE*
Ga0120090_10007148	F003658	GGA	MNDLRGEPTFACICGCLMFEITVQWDQETREVGWYDLAQKCKDCGTITTAPTPIDWMDCN
Ga0120090_10007155	F001937	N/A	MTPDTATIVYSYFFVIAAVGAGIAMVAKHAIQKHTEELKDQLNKITYALYNDGKTGLINKVDQLIENQQCIRIDVEVLKSKAEQ*