NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120365_10080

Scaffold Ga0120365_10080


Overview

Basic Information
Taxon OID3300011448 Open in IMG/M
Scaffold IDGa0120365_10080 Open in IMG/M
Source Dataset NameFecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1772
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFreie University Berlin
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1093
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Viral Communites From Wild Urban Brown Rats In Berlin, Germany

Source Dataset Sampling Location
Location NameGermany: Berlin
CoordinatesLat. (o)52.529611Long. (o)13.401343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053097Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0120365_100801F053097N/AAIPPFKDFYNKSKDKQDAIKKIEFIIWRYKWNTPYEAYPEKERTWRVAKDVFNDEHYVPDADVQELAKRFNEF*

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