Scaffold Ga0137452_1005228

Overview

Basic Information

• Taxon OID: 3300011441
• Scaffold ID: Ga0137452_1005228
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3928
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9779
  • Long. (^o): -107.0031
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055362	Metagenome	138	Y
F089704	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137452_10052283	F055362	GAG	MMDHLISKFRIWHFGYTCRHNPERIGFELRRMLVELRGPDLRAQTLDLMFSEREGTFPGALGAVAASRWKITNSADIAKVFESLTDEQRGRLYFSMRSILLWCRG*
Ga0137452_10052286	F089704	N/A	MNIPARNKYQIKVVCQQSSPAESSWKDVLTTDIVTTRTAVVDIAERLQRIFPKPEHLVFVRLLEHSGQPLQVAWETPEEPGNGPV*