Scaffold Ga0137433_1009851

Overview

Basic Information

• Taxon OID: 3300011440
• Scaffold ID: Ga0137433_1009851
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2863
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8895
  • Long. (^o): -106.9075
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012128	Metagenome / Metatranscriptome	283	Y
F020185	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137433_10098511	F012128	GGA	MERLRELRGPDTRERDLANILGFEHSRAVRWKEGQMYVDRAEYLVRLADALDVEPMLLVAMASGTLTVEQAHRQIAGAGKGDDGKRRRGASRAEPLEVASDASLFALDASKFDGGRGVVLLIASNGEGRSELGEVLGRHTDVGGMVAGSLSMGLCLAERYRPELVFIDLGVANVQAFDACHVLASLSTKAQRRCRVIAGTATVTDAVEKPALMAGAANVTLFPFTLGLFESELGRLEERLGPRKTLRRA*
Ga0137433_10098512	F020185	N/A	MPRARSVGLLFVGVVSASVACSIAIRRDLAAIPPGQVGFDDMCGLQEYFDALEIKTTRPPRVVSALDLEGATGGRRVRGGKERFAFDNDFQLKHLRRVLNENWRRLPESVETADKIEIEVKWSEKAGAKRVITDEEAEMTIGPETFNLPYHVCLSELIYGEPLYRQRRVMWGLPLPGMPARAAAASDAGATAPDGHTPDGGTPDAARSDR*