Scaffold Ga0137451_1044442

Overview

Basic Information

• Taxon OID: 3300011438
• Scaffold ID: Ga0137451_1044442
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1300
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9779
  • Long. (^o): -107.0032
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081905	Metagenome	114	Y
F094821	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137451_10444421	F081905	N/A	FKTEFEDVSCFGDANRVYLPGLKDAGGTLGGFFNSAELALFEAAEQDTPGLLKLIPSTTEPTFFWTGPAYLDASIDASLSAPKVSGTWKAAGAFLLDSGVLGADAQAARDRRLAGRTPKRK*
Ga0137451_10444422	F094821	GGA	VFDSLTVTGLAGAVMYGSREAVVIKSWRIMRVKADGGHWMLSAKIDRVVSAFYARQAPLLFTAPRAGGFWLWPVDAIEIGETSLRAELGPPER*