Scaffold Ga0137451_1010501

Overview

Basic Information

• Taxon OID: 3300011438
• Scaffold ID: Ga0137451_1010501
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2676
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9779
  • Long. (^o): -107.0032
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063430	Metagenome	129	N
F068627	Metagenome	124	Y
F068642	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137451_10105013	F068627	GGAGG	VSVSERKDHGLRLDRSSVTADAVEPLLTAAEVGRLLAIPTKRAYEVVGNLAIQLAPHTLRWRVSDIMVLIEERRRSK*
Ga0137451_10105014	F063430	GGAG	VGRARPDLITVLEENPPGPNAGITLVRRVRTREYRTEIGPRGYLSQIEAAAFLGKSVMAVNRYVRLGLLRDTTRHGISTIQLAELRGFRREYLDGGKGGRLRRGAGAERRRAKRS*
Ga0137451_10105015	F068642	GAGG	MRVRSIHEMPEPLRRHNEGQRRDPEMVVQNLARRVRVVVLWRRRDDDPERWIYLERMLPGEVSYEMVKQRWGGGAYRIRSFGVWNRARRQEKYITQVAFWIHRGFPPTRALRARLRGREIRPLT*