Scaffold Ga0137451_1000355

Overview

Basic Information

• Taxon OID: 3300011438
• Scaffold ID: Ga0137451_1000355
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13958
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9779
  • Long. (^o): -107.0032
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017350	Metagenome / Metatranscriptome	241	Y
F020724	Metagenome / Metatranscriptome	222	Y
F039366	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137451_100035512	F020724	AGG	MARLLTIVDAVSDASLEIGIVQRPVTLVIGTADQDIAQMTALLQNVADELLLDPPYREQLGDGNWLIDTGGTVRKSRPTSDSDLILFDPRVVVNGLKYRFLKAKGLEYGEEQRDFIVRLNKIAGRNAPVIDLNEDPGRVQ*
Ga0137451_100035513	F017350	GGAG	MSDTPTLVRFSSGWERDGNGPDGLPLYRETIRVRMDRPPYLALEREADETDIADHPGPYELYQKTCGARKAIVGYPLALWPACPPHIFQMCAVRDIHTVEQLAQLMSKKRRAEALKTMPPEIVEIADRAVTMIELHGKAGQYESIVTDLQSQLDAVKEQFAEAVSTIAAQKTLIDALRLKAAA*
Ga0137451_100035516	F039366	N/A	MSGSARPNDQMHLPGLGVPVDPWTGFVLKPVVTERLKRLKEAERVFRAVLHELDGTTEGSMPGNRQMALAFTALDQTRLWAAASIIESS*