Scaffold Ga0137428_1003078

Overview

Basic Information

• Taxon OID: 3300011432
• Scaffold ID: Ga0137428_1003078
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5558
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8896
  • Long. (^o): -106.9079
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009376	Metagenome	319	Y
F020236	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137428_10030783	F020236	AGGAGG	MKKMVGFIGLAFLHLMVACSSMAPTETRQPTAVTDFKSVAGKWEGPLIRGHYFTQNYDRVTLVIDDKGAYDIAVMRTRTTAQGVSVSYSTIGVFAEKGKLVLTDGKLSAKGEKGGQATLQLYVDPGSSERLLKSDAKDSEGFTYTAELKRTGDSASAK*
Ga0137428_10030786	F009376	GGA	VETHSSSERPRWLFSRRADFWLASGGASLGLLAAALVILWHGDWELSWLDFVLAELHLGATYGAIIRRRIWRHRPVDVLIVPLVILALTYALTMTDQMILLTSIAMYAAVWHRGRQSLGVACFYQGGMGGPVSRAHNFLFRGAIYLPMLAGVLTYTHLAPTEYEGEPYLALALGRQMTWLVAVAAVVWVMAYLAWMF