Scaffold Ga0137428_1001059

Overview

Basic Information

• Taxon OID: 3300011432
• Scaffold ID: Ga0137428_1001059
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11137
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8896
  • Long. (^o): -106.9079
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025043	Metagenome / Metatranscriptome	203	Y
F096805	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137428_100105912	F025043	GGAG	MITVGEFPGIHGQNRRLIPAPKNPLDKSTIVSIFPKRIQERKATISPGLFDVPPGSFDKPSCLVVGTSSWWKEIDDTQPLLEIPVSSISVADSVVKDYCNGLLACNMSDQMPGLFYLPGEWNAESVKKEHQPIILKYLAFQRKWFLELVRIADILWSRSNGNPLSISEDARLACKELNITQKPWLGDLQTAELVRCVACGSLRNGQFPVCPTCKAVADPDLAKKLNIQFAQ*
Ga0137428_10010596	F096805	AGGAG	MKGAALSEGSSGDNISHFAAIRIRSNGNGSLKMTVYSLDNIKFKQLVPFTMATQNRIIPTRLVNFTEQRASFEIKTTEIDEYFRINRITVFMKEMYTSYPGS*