Scaffold Ga0137455_1001527

Overview

Basic Information

• Taxon OID: 3300011429
• Scaffold ID: Ga0137455_1001527
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6510
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9777
  • Long. (^o): -107.003
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022436	Metagenome	214	Y
F028841	Metagenome	190	Y
F033849	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137455_10015275	F028841	GGAGG	MSDMRDLEAIADKLEAAMASLRLIGYGDISAIGYGQILDARCLLAEAQGRLDSMRKQEAA
Ga0137455_10015276	F022436	AGGAG	MLKPVRVFRNHYICDACDHEFADEMLVVSSSYCPCCDAEIEPYSSEDLFDIEAYDDEAEVA*
Ga0137455_10015277	F033849	AGGA	MDIQAHEDTTGYAPASERWYAIDHDTFDGCEDGNNREGRGSSAKAAVMDLIERMLDDGEIGHDECRELFRIHLIDPREVGYDG*