Scaffold Ga0137436

Basic Information
Taxon OID	3300011423 Open in IMG/M
Scaffold ID	Ga0137436_1000028 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011423 Open in IMG/M

Scaffold ID

Ga0137436_1000028 Open in IMG/M

Source Dataset Name

Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46253
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (81.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

46253

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

49 (81.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9778	Long. (^o)	-107.003	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9778

Long. (^o)

-107.003

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016408	Metagenome / Metatranscriptome	247	Y
F025043	Metagenome / Metatranscriptome	203	Y
F026598	Metagenome	197	Y
F034225	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137436_100002843	F026598	N/A	MVINSIGEAPSKDGGSTNYPVDATIVKNADNGSEEFKDVSITWNFNSKAIGFAAGFLGSFGVEAQQDKRYELNSAVGKMIEVFVENGEWQGRIVNRVNHKYRPVRS*
Ga0137436_10000285	F025043	AGGA	MSIVGEFPGISQINRRTLRAPVNPMDKCTVVSIFPKWVRESKATITPGFFEIPPGSFEKPSILVVGTSSWWKEIDEHQPLLEIPVSSIQVADSIVNDYCNCLLASNAGDQKPGIFYIPGEHTEDGLKKNHMPLLVDAQAKQKKWFMEIIRISDVMWSRSNGNPLSISDDARLACKQLNITQKPWLGDIQAAELIRCVACGALRNGQFPICQTCKAIADPELAKKLNLTFAQ*
Ga0137436_100002855	F034225	AGG	MADTSTEQMALTRDVLPGGFMERVTAMLASVSSSILTEPANTPYHQGRAAYAQKVAGYPQQSGTQAGPQVVMGVNVIAATTYDPVTKTSTCAIADIDLESQIRTLWNALAGIDTPS*
Ga0137436_10000289	F016408	GAGG	MAVVESQVAALELEKVIPKVRVLFERDDKFYASIKKREVEKISHRQMRVPLELRPGGSFQYFNPDGGDLGRGGGPTYDKAVLNCVFLSENIEYTKLTQWATDDARKAIVNSVRRLTATALDEMRRQLDAQMMQNGSGVIGTTLSDTPAGGVNVMVMTTDFGARLIRYGQTVQVYNNALTTLLGVATVTKHDTANKLIELTPQVAGTAGGGGDKIVTMGLSAPLSLPGLFGVPYHHDNASAGTWLGFARSTTPEVRANRVDAGGAALTLPLPRLAINKIGDRVGIDNNFSPKAWTHPCQQQAYEEIGQLVSIIQKAAKEEALNMYFGGSNMQLAGAPITVSYNWDKTRIDFVVDEVWGRAEILPIGFYKTDGRNIFEIRGPSGGVAAAEIFYMVVGMQTYVSNPAACSYINNLAIPVGY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137436_1000028

Overview

Ecosystem & Geography

Associated Families

Sequences