Scaffold Ga0153954_1000096

Overview

Basic Information

• Taxon OID: 3300011418
• Scaffold ID: Ga0153954_1000096
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL038 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 76885
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Wekiwa Springs State Park
• Coordinates
  • Lat. (^o): 28.7104
  • Long. (^o): -81.4844

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021833	Metagenome / Metatranscriptome	217	Y
F025832	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153954_100009678	F021833	GGA	MPMLGSPNLYRGNAPLAMRLKIDDLHAQLAPLERYGVSPMSFAITGGVRALVRSFGALRGAFCSGANGRSGSETL*
Ga0153954_100009684	F025832	GGA	MIIAALTGALSCLAQDAIAQQSRPVHAGDWPIQNGVKHQPTRGAAGEEFSRGQAQETDKLYDELMSNFAATHHTGNARMR*