Scaffold Ga0153933_1021577

Overview

Basic Information

• Taxon OID: 3300011411
• Scaffold ID: Ga0153933_1021577
• Source Dataset Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1546
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Wharton State Forest
• Coordinates
  • Lat. (^o): 39.778
  • Long. (^o): -74.6307

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050113	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153933_10215772	F050113	AGG	VDSADVLSNPIVAFALRAALGLYVLYMARSFYADPFGYFRRWMPRMTEPPWARSTIRGLACFCIWGGCFIVETAIATQIFGLHGLTLAYVLVTLAAIATWFLLPRSSGTLSEDDSGNDTLRRM*