Basic Information | |
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Taxon OID | 3300011409 Open in IMG/M |
Scaffold ID | Ga0137323_1028980 Open in IMG/M |
Source Dataset Name | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1226 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.8895 | Long. (o) | -106.9075 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003507 | Metagenome / Metatranscriptome | 482 | Y |
F005063 | Metagenome / Metatranscriptome | 413 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0137323_10289801 | F003507 | N/A | RTDVAVMYACGLREVHADRSQAHFVLPETLAQFRHRLDAELMDELVAIQAAAAMEQGLVSPAHLLVDTFPAEQGSQRVTDATTLYKAQKNSFDSSRR* |
Ga0137323_10289802 | F005063 | AGG | VRLLRDLEATRTAHRHITKQSQRLTQGKKLAHCKIVNAYDPTIAPILKGKSNCPAQFGRKTGIVSEPASGFIFANRVPAGNPSDPSYVLPMLDKVQHAIDLVACRKRLRLHSLGGDLGLNDAQLRQALHTRGILTVGIPTSVEPINPTPSQQEVRDILNASGLHRTRTPHQVHLACASGYSRPVVEGHIATLMARGADQIRYKGLTGAVIQMGMIVMAHNGAVLVRVGQQR |
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