Scaffold Ga0134119_1184779

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134119_1184779

Scaffold Ga0134119_1184779

Overview

Basic Information
Taxon OID	3300011370 Open in IMG/M
Scaffold ID	Ga0134119_1184779 Open in IMG/M
Source Dataset Name	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	792
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location
Location Name	USA: Point Reyes National Seashore, California
Coordinates	Lat. (^o)	38.04	Long. (^o)	-122.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104187	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134119_11847791	F104187	N/A	QPMSDSNKPLSRVTHLYYGDRWVWLKTTLKGVTSQSVLRSDDENFPIERVEKWLTDDKRIISVSYGLEDKTYVIISHRYDFDQPRVGGQKLFVSNSFPEQKIRDAWKTNSRVNILAYCKNSWVLVTEENPTEVIGQSLSTWTDIEDVKAEVGKLWKADKQVQTLVHGQIDGEWKWVLLAQKTDGKQAGQAFYVNSDWPMDKISDYYKDKKYITTLAWNQPEEYWVLICGPVAGGQSLSTTGDFPSEKVQAMENLYFYGKRD*

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