Scaffold Ga0151652_11004927

Overview

Basic Information

• Taxon OID: 3300011340
• Scaffold ID: Ga0151652_11004927
• Source Dataset Name: Combined Assembly of Wetland Metatranscriptomes
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 781
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location

• Location Name: Twitchell Island, Sacramento and San Joaquin Delta, California, USA
• Coordinates
  • Lat. (^o): 38.107
  • Long. (^o): -121.6475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032872	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151652_110049271	F032872	GGAG	MTAPNDLREAYTGQKRGPQAGFASCLSHSASKCLLTADGDGLGMPEPNTDRAVAGEALEGLPGSKSVARAAEAARNQGDPAGSRRTNYEGQAGRGVQRQEERPEARQGVGFVHSSPWQDASLEAGEGTNRLTKHAQATRCRKNDGSTLANLPAGDTPRVSLRSPVRANRTPGSVRGAPGNRCPYLDVRSEKLCEFGGESPPSLAGKPLEFGTKELNGKV