Scaffold Ga0153700_10871

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10871
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14217
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078405	Metagenome	116	Y
F100670	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1087112	F078405	GAGG	MLSLFINSIGVNMKQFEYQLINKTTGRVEHARATAKTADIARLQIVLMYGRQFEVLGLYSNINPPHHVLGEIDCSDFPDSDIQWLISEVAKQEVAA*
Ga0153700_1087120	F100670	GAGG	MEALLASFLESLMPAAVGGSEAVMGGGAAPMSFGDTLGGFAQNQINQQMAPAMEAYKGFTNPNATMGDMANSAFKYSFNPKEDEKALMSPQMGNTYGGMASNYVGGIPSLLQNTNSGILPYIGSR*