Scaffold Ga0153700_10439

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10439
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20558
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.04%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019993	Metagenome / Metatranscriptome	226	Y
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F026511	Metagenome / Metatranscriptome	197	N
F028461	Metagenome	191	N
F029051	Metagenome / Metatranscriptome	189	Y
F049572	Metagenome / Metatranscriptome	146	N
F086850	Metagenome / Metatranscriptome	110	Y
F088542	Metagenome	109	N
F095365	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1043910	F026511	N/A	MNTTTEIQYVGEATMVTSDCIAIAFKRPTGSNPVNVNGYPLADGETLTISQNVGDIDRTQYQIYFGSGAGSDECYVFRTLIIDDYRNG*
Ga0153700_1043915	F021092	N/A	MQDNDLRYFQVANQFNRDVVVSFNDRSLEDGVEKMRKFLSKNTGFHRIKLYSNNDLKTNGVPRQEPQVFEVSITGKEFDPPKEDSAPITGFGVNPSYPSAGGIIGVEQYLNKHEENATLREKIKGLELELQYMRDQHSREIDRLRADHEAALKAAKDSNQMFSQGLGMIMQRMGVGE*
Ga0153700_1043916	F023325	AGTAG	MRIISPLIEYLTVSKKMKQVGSYEGAYTKSVYLPFTSNALVGTQYYLQPDEVLDSQNNFLTTIELVDSSTNATAPTIPTTDPLTPGQASQGYLYICNTKREILATLPLYTLIRRLNAGKPQYLYFDDPVVWQNCFIQFESLGTAITTAHSVWLKVTYSPVEK*
Ga0153700_1043920	F095365	N/A	MEKYLQAAYEYYRQDVKENYLSYEDFKKSLGAACPPCKPGSKLPWWVYLAGGAAVGYAIKK*
Ga0153700_1043923	F019993	N/A	MNKQVKLLLVAGVGYLGFKAYQIYTAISKLSFAPTGINFSIIKERGAIGGTLFVDIINPTAANVKVDGFTGTVTTTSGTLVGDYKGAAMILKPGVNNVRIAWGSRSTTTLIPLALGIVRGQYPVLKFNTVFNVKGFPIPTSFSMDTKAYKPTFI*
Ga0153700_1043928	F025232	N/A	MENVNEKILADYRLIVARLDIMKGELTELQRSNWKLRKAFCELLDIYQETLDRFDSIKDRSDVEYEWCEKAGILD*
Ga0153700_104393	F086850	N/A	MESKKIKFGLGEYSKPTPKKLRRLGDGLLLVSSIVTEETMVDKPALASVALICGVIGKFLTNFFSAE*
Ga0153700_1043935	F028461	N/A	MKKQNAATLFKNPQLQESIIKQYKEAGLDFQVKHSNYNTQIIGQESIIKFIQTEHHTRVFVAYNKIVKDLKASEKTVEILQGEWSTENFDSKNGLRPCKYKSVLNLDITSAYPYCLFINKLITLDTFNYLMKLPKNERLPAIGMIAKKSVWIDYKKGKADTWDVKAGEYANIFFYVIQQITDLMAWAAEIAGDYFLFYWVDGIFLKPSIPKALLQEITGIFAEQGYYYKYENVKNFSVIRDGEKLFINMIKNGEEKPYTMYDKNLARNFTKVLQQLENA*
Ga0153700_1043936	F088542	N/A	MAKKKSAAPKYVDRKYNYPKGYTERGKKKTGFMNSKLGAKLFVEANLEKIQKGTLPFEKLTTREKRIYRGKTSNTLQNTYRFGKDTYYDPTGTIRKILDNVPALKGKRDLTNLLSKKDFEERFNQNINPTKGKLKDKERSKWLEFSSSLYDFNKGEKKQFYRDESGSLMDIVTKLQKARKSGREVRVIDTDGSIKTGALAIDRMRSFEADKLKEFTDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNQTP*
Ga0153700_1043937	F049572	N/A	MENNQTLARVNDVNAAITPEMLEASSNLSKLKTAINLSPEYIELAKVGESFRGIFWGFTEITVNDQVTGEQRTIPAAAFLVEKTIRINAGVALVSECKKAGIDKGTPLEVTFKEKKGNLKLYSLTLLG*
Ga0153700_104395	F029051	N/A	MALSINTTITTDEGFDVTDAFGYLNIFILAPNSNWVNLSYFKSESDWATGKSPLNVSTLPNQVQTELTSNEFWSTTLALTIHEKCQTAIEAITGAGTVTILTA*