NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_10408

Scaffold Ga0153700_10408


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_10408 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)21516
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (73.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024787Metagenome204N
F026555Metagenome197N
F033425Metagenome / Metatranscriptome177Y
F036148Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0153700_104081F033425GAGGMAIITSQVAVTTTSQSIVGVDNVQRDVLLHAKHEVYIGNSGVTSSNGYIMDNGDEVRLSLTEGEDLWAVSGAGTGTLHVLVSKVD*
Ga0153700_1040813F036148N/AMATKKTNKTTKRNRRAPRKAEQLNKLETHYVTLNEMYRAAKAAGFTNEVAYWLITEPGTSIPDWITGNKPNEIVPRIDPTDDEDED*
Ga0153700_104084F026555N/AMSKFDYHKAMREGHGYNQYVADLLQQFGVPKVDVPEFTIATTHDEIRDKTLNEKDIVVDDLILEVKSSSRSFKNADDFPFNPVIVDTVHGFDSKIIKPFAYVMISQITQAIFVIPVSTKYDWTVQTFYDAQRDIEEQFYMVKKRHCRPFIEMVDILLERANERTNQM*
Ga0153700_104087F024787AGGAMNYEIYGWLITICLFTLVALLIGVTWIVAVENGYDKGFKSGYKRGTADTKHTNVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVSLWDKENK*

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