Basic Information | |
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Taxon OID | 3300011339 Open in IMG/M |
Scaffold ID | Ga0153700_10408 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 21516 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (73.68%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Seoul, South Korea | |||||||
Coordinates | Lat. (o) | 37.5254611 | Long. (o) | 127.0168945 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F024787 | Metagenome | 204 | N |
F026555 | Metagenome | 197 | N |
F033425 | Metagenome / Metatranscriptome | 177 | Y |
F036148 | Metagenome | 170 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153700_104081 | F033425 | GAGG | MAIITSQVAVTTTSQSIVGVDNVQRDVLLHAKHEVYIGNSGVTSSNGYIMDNGDEVRLSLTEGEDLWAVSGAGTGTLHVLVSKVD* |
Ga0153700_1040813 | F036148 | N/A | MATKKTNKTTKRNRRAPRKAEQLNKLETHYVTLNEMYRAAKAAGFTNEVAYWLITEPGTSIPDWITGNKPNEIVPRIDPTDDEDED* |
Ga0153700_104084 | F026555 | N/A | MSKFDYHKAMREGHGYNQYVADLLQQFGVPKVDVPEFTIATTHDEIRDKTLNEKDIVVDDLILEVKSSSRSFKNADDFPFNPVIVDTVHGFDSKIIKPFAYVMISQITQAIFVIPVSTKYDWTVQTFYDAQRDIEEQFYMVKKRHCRPFIEMVDILLERANERTNQM* |
Ga0153700_104087 | F024787 | AGGA | MNYEIYGWLITICLFTLVALLIGVTWIVAVENGYDKGFKSGYKRGTADTKHTNVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVSLWDKENK* |
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