Scaffold Ga0153700_10297

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10297
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26932
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012199	Metagenome	282	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1029722	F001915	AGGA	MEWTLAHPLHDVDDIVDMADSVFGTETDGILTRDRAVFRKHVTVATTVQVFDKSKEFIAVCHEDDKLLGYCWFDRGGYTTYANEEISNAKFHHLDLKLSPRLRVRLINEMIDQHILWAHQWGIPVVCSTSIRAEHDGFMKIHKKRGFTVNGSYAWIRTEKGMQCLTK*
Ga0153700_1029723	F098944	AGG	MFDKIRPEGSTVSSEDIKQRARDYAKAKRAQKKAMKLATGKIEPKEAIETVPVKDEFDMTNFTPRSQKPMAGRPKSIVNKVTEYGALFNKLNDERTAKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHVQNVTREDEGDADDALNDFMESLRKV*
Ga0153700_1029726	F001059	AGGA	MATYDIDALKADLPTAKELAQFVYDKVQVSLDLIGKPKEEQYVVAKNALEGKKIPSEYQTSDNPYVDKKELIPVDEIAKLPKRSIDLPDPESQVHFFGATNMPHPFDPQSDKKVQIHFRKYDNGLITYQIAGPLEQIEVGSRINKYGQTQPERISWLDPRTAEEVLRRPDGTFTEKGRGLYLYCIGEKGSGIWRFIDKDLASVSAKNITNPWA*
Ga0153700_1029727	F006264	N/A	MEDPSTIFRNRLASQSEACARKTLEWLQKDLQGSHKLEPEEVYYLAYAAQILLHIRDSYGQE*
Ga0153700_1029729	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKVNFEFERFSEQDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMISPVRNPITQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKVDVNLEGAMQEAMSGDESEMMQEPTGEELQDAIRNNTIYRAKYKLTGYETTLRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWLRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPMQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHVFEFQPMQGNLGYVESAMARFESDKMAMIGMTSPTDTMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDAIYIMWKTLIQYSDDFNIQQLAGTCLKGQPFLDAISIENFEFIDRRMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMVPPEVPEMFVKVRRPFEDTLRVLGVKDVDAYLPTFEEAIKIIQAQASKGPSAEQQEIQSKVALNQAKTEESGSVTALNIKKAEDIDTDNMFEALAAKRGKLTAVQVD*
Ga0153700_1029733	F000857	AGG	LATALFGNIWSKAMNEDEHVEVNEDYYLKGNLEAGVDGVFRQNDKLFNEVKSGTWSQTFKTNNIDYKVGAIDGERYVQYDQKNVEAIREYCKGRREFYQMIGTTDNPFFAGTFEAMNLPKCFAHEISGKWFNNRPWELIKQDKADKIKFYAIVNQFYSDFVCHPSGKIPLPYNPLVKTK*
Ga0153700_1029739	F012199	N/A	MGFCPDVPSNALGPNEYNIGKNVEADVRTIKKIFGEKEICSTITPQPVFMEGGFRSETSWVYVVATRDSSNQGKWWMITATGITNITPGVGANPAAYIAGYVNGINITTAWVGSVFFINDTLGNPMYFLPTANEITVFSDAGWNYEPGVTSVTAGFVRNFCSPNVGNILIAGNLTKVIGGTTYNYPTTVRWSQAFAGSGVPTTWEPTLSNVANEQEVPVRGPLIDGFFLGANFYVCSYWDTVVFSPISYQNSTAPIFGVRLLNQGRGLLNNNCWTNTDGNVYGIDARDIWVFNGSEFASLANQKVKDYFFQNLSPVYANRLFMVNNTQKNQIEIYYPDLTSTGWCNKMLSWRYDLRVWNAHKDIANAVMG