Scaffold Ga0153700_10221

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10221
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30188
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (83.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005909	Metagenome / Metatranscriptome	386	Y
F006618	Metagenome	368	Y
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F053128	Metagenome	141	N
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1022110	F005909	AGAAG	MKYNMESEEYLEKYPTPELQYEGAMKYCTYESIQTGASGKMA*
Ga0153700_1022131	F006618	AGGAG	MSKIKQHLEEQIVISYSEQENTGWKRYICFNYEGNQYELTLYWEEFNGYDTYWRSPDKTPAWVVEWDSEAHEGMSFEHYLDDLTWEMNK*
Ga0153700_1022134	F053128	GAGG	MKGYFVIDNQGTGWKEGYLWKSIKEIADSIRDYDDYRELEISNLTHSQVCELWDFEYHRITPANCEKYGVNPSELTREVKI*
Ga0153700_1022135	F006842	GGAGG	MKATPAMCGDHLVPITECDCVNYLQELKTSAERLIQLTREREKMK*
Ga0153700_1022136	F094887	GGAG	MNKDMKEIDEVLTNLWWSAEISDSAKLWWNDHYREILEKELAK*
Ga0153700_1022139	F011756	GAGG	VSEPRYLFGDDYAYNGGYEELIDCNICNKMFDRVEYRSDTCSDCEDEIIKRERARA*