NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153700_10170

Scaffold Ga0153700_10170


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_10170 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)33185
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (62.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001459Metagenome / Metatranscriptome690Y
F004760Metagenome / Metatranscriptome424N

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1017011F004760AGGAMPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRAALRRKIK*
Ga0153700_101707F001459N/AMIRLLRSLKFFVRNYDWVNEPKWEDEDEKAWTGFLATPTGRKLSLILLNLTLRQNASAVMKKPEELADACGHARGYRACVATLESLASKKLNSAIPGYGDGSDEPVAD*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.