Scaffold Ga0153699_1788

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1788
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11603
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001143	Metagenome / Metatranscriptome	766	Y
F007518	Metagenome	349	Y
F049625	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_178811	F049625	GAGG	MLSEIDLKDWIEQPSKPLYDVPRETPIKTHIGMLWFKHIDGAYSLCYDAQGNPVHMRAWATVNPYRKKQV*
Ga0153699_17883	F007518	AGGAG	MTDWTKEEDEAFNEVERQSNLGKQILRDLGQPYYFDIYVSPSQRNAILEEVAREFDKMKAFGTTAESFATFVRNMKK*
Ga0153699_17886	F001143	AGGAGG	MSAWLIGIVGVVYAVVAADLLYKGNTGLGIAFVGYALGNVGLYLEAAKP*