NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153699_1685

Scaffold Ga0153699_1685


Overview

Basic Information
Taxon OID3300011338 Open in IMG/M
Scaffold IDGa0153699_1685 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)12730
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5955556Long. (o)126.817072Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011143Metagenome / Metatranscriptome294Y
F018168Metagenome236Y
F027846Metagenome / Metatranscriptome193N
F060861Metagenome / Metatranscriptome132N
F088303Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0153699_168512F018168AGGAMKLTVKQKAIVKSYLRSVAAATITTILALVADVRPELSILAGALVAPLARYFDPADKSFGINS*
Ga0153699_168514F088303GGAGMSRPMIRIHNSETNEVIDREMTATEFKIYEANQEAELARQAEVEAKAQAKAKAEGKLAALGLTTDDLRALGL*
Ga0153699_168519F011143GGTGGMHKIEITKKDGKTVAYELTPSVKVAFEAEFKTGWRKRLGELQLESDLWWFAHALEKAAGKTDKDFGDDYINQYADVDILYEPKNG*
Ga0153699_16853F060861GGAMGERKSMRPDLTQYEDAATLNKWFINNFPQGRIDLSIQELNLEKGIVVIKGSVWRDLNDAYPAVTNYAKGERDEYPTHMRKWYLEDTATSCIARCLILVKGSSKTAPKESMIAATTWAVEPKAELDQELLQPKPTHSLTREVENLTEIHCDGGQRMLYKAGISKTTGKPFAGYVCVCGQKCDPVWGSPRADGTFVFKETING*
Ga0153699_16855F027846AGGLVIVKWDKMSGAYVDDKRKHFVKASLIREYAHKAMGATQIRGRLSAKMVEGYWLDKFKEAVKYEL*
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