Scaffold Ga0153699_1624

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1624
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13680
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F002487	Metagenome / Metatranscriptome	554	Y
F003265	Metagenome / Metatranscriptome	496	Y
F050321	Metagenome / Metatranscriptome	145	Y
F063703	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_162414	F000166	N/A	MSNIPTPKDAEIFAESIKKWQQILNLGDWRIEKGTKPAKQAMASVEFNENARLAVYRLGDFGAEKITDDSLDRTALHECLHILLHDLMTVTADPKSSDEDIEMQEHRVINLLETLLKDSHGVI*
Ga0153699_162418	F050321	GAG	MITFDKWYPMVQPTHTATQLAFDKAVEKVQEEYRYAVAANKLEFKTREVEVELYDKRARQNTIELGSFENRRRFQIFV*
Ga0153699_162419	F003265	N/A	MTKWFALLLICIVLWAKAQTFCIVTDFYGLSWLHNPSERHQRLSEWLTTNGDSCNSEQLVGIWNNLALWAGVADSAELRSKVLFYYARAMEREKK*
Ga0153699_16244	F063703	GGAG	MNTQELRRKARQLYNNKLVPTEVNQHNQRKWVRSVLKLGDKWLLAKQVERLQ*
Ga0153699_16245	F002487	N/A	MITREDAIKDLSGTYCCYCTNPKTYGSCCGENHFVPFEDLYEEDKEAMIEEYLKEE*