NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153702_1179

Scaffold Ga0153702_1179


Overview

Basic Information
Taxon OID3300011337 Open in IMG/M
Scaffold IDGa0153702_1179 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)23575
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (11.11%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families12

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NamePaju, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6518694Long. (o)126.72164723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012871Metagenome / Metatranscriptome276N
F019140Metagenome / Metatranscriptome231N
F021113Metagenome / Metatranscriptome220Y
F027518Metagenome / Metatranscriptome194N
F028175Metagenome / Metatranscriptome192Y
F039140Metagenome / Metatranscriptome164Y
F041764Metagenome / Metatranscriptome159N
F045753Metagenome / Metatranscriptome152Y
F049635Metagenome / Metatranscriptome146N
F063704Metagenome / Metatranscriptome129Y
F082704Metagenome113N
F091602Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0153702_117918F027518N/AMNTENEIVLIHEELQEMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLSGIAVTAGVIGGLIVQLILKMI*
Ga0153702_117919F039140N/AMKEWVNSLLSSCSKVSSKRAVAIFVVINLIMLSYVATFSKYDCPIAMFDTLALLTGGLFGGTVIEQFTKQKSNGETNGSKKNSGRDLQ*
Ga0153702_11792F063704N/AMTITKYRMITENGYIETLNEQEAIEWGNYATVTEEVPDENG*
Ga0153702_117922F021113N/AMEKQKYQSNTTIAIIVTSVFWILICLAFWNFNPKVETQVQIQKQDSIIYYNSGEYDRLLQEEINLYGTYRRYEDSQLTAKKTYRARRDTILRVDTIHKVDVITLVNSCDSVIEADSLVINNLQEQINIKDEKTNNLQEVVVAYEQKSKLLSEEINTLNVEKKKLEKQKKRRTSAFIVSSSVAILSTFVISILL*
Ga0153702_117923F082704N/AMAQSKTKKGICVYLHKDLWNEIDEKRGENSRNSFLSEAIKFSLKFYVEESKVKLK*
Ga0153702_117924F019140N/AMKKPQLHESLKITKDREHEIVNLIAAYFQQGKILGDILLELSQRKDMNAKEKIYLALMIGSLMNKSNEDGAKQN*
Ga0153702_117929F012871N/AMPTITQRVDRAERESAFVADHDLPTFVKLCSKVCAMYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFELNAANELQKKCEHFGALSISFIGDVLTYYKPYRDKANLQIQKEIAELKDQECKKIKEKEMAVNDDSWKRMLAEDIESFKNGKYTVIEIRAVSIMRWLEEAKYITAETFTDEEYKLCKARARKNIFFEQSLNKPMVERMSDRKRQLLKESIHFEGMRELYKLYLKKQTLA
Ga0153702_117931F091602N/AMKSDLTFCPSCESKELGERVDQILRDQNLQDWDSAYEFVDDEGEIKVCFDCQEWDDADDDAKGEGWD*
Ga0153702_117933F049635N/AMNKQIYSTPFGRLVKINFKTLTNFKTALRISDPTARLYVAHPERMRIKDFNNICLHTGLSRDEVFSTFTPTKLINEEND*
Ga0153702_117936F045753N/AMYCPKINYCFNDNDILSLNKRIKAIALNYHEEHTGWFDVGKNEHLVFIDEQENMFLIYLRGRFFRRDEPGFDLEFVRLEKDKISFDFEIKMFDDHI*
Ga0153702_11794F028175N/AMAITIEDQPYQYTPVGQRLMIVCRSTNVANAGFRFVFDFGAFQVNVQPNAQNKGMLDLAPIFREQLQHDAGAASESNIAIENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQISDGYKPNPNTRYALDGITKYAMSERTTDTHKWGEAAGRGLSSEWVYIPTRLADFGQLYSISNNGLLVDNVANNLYLTTYDNNDEIIDATNYTIPNEDLNSVSRLGAYPANLINDGVDFTNVKYYTIQAGEEIAFPIYTPASRVYCFYLIADDCRYNNVRLGWSNTVGGVDYFNFTKKSELSYNYDRKQYQKVVGTYNESTFDFNTWDRGITERYVNTTKGLQINSDWVSVGEFQLLQTLCRSNDVFIINNDGTSTPVLVDAPNFVIRDERYSKLYNVTLNLKYSQPVGL*
Ga0153702_11799F041764N/AMKIEAGGFLKLELFNNDANVFLNALVKITNENNKMGFKTYGLTEDEAKVLNAILDSLE*

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