Scaffold Ga0153702_1179

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1179
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 23575
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.11%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F028175	Metagenome / Metatranscriptome	192	Y
F039140	Metagenome / Metatranscriptome	164	Y
F041764	Metagenome / Metatranscriptome	159	N
F045753	Metagenome / Metatranscriptome	152	Y
F049635	Metagenome / Metatranscriptome	146	N
F063704	Metagenome / Metatranscriptome	129	Y
F082704	Metagenome	113	N
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_117918	F027518	N/A	MNTENEIVLIHEELQEMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLSGIAVTAGVIGGLIVQLILKMI*
Ga0153702_117919	F039140	N/A	MKEWVNSLLSSCSKVSSKRAVAIFVVINLIMLSYVATFSKYDCPIAMFDTLALLTGGLFGGTVIEQFTKQKSNGETNGSKKNSGRDLQ*
Ga0153702_11792	F063704	N/A	MTITKYRMITENGYIETLNEQEAIEWGNYATVTEEVPDENG*
Ga0153702_117922	F021113	N/A	MEKQKYQSNTTIAIIVTSVFWILICLAFWNFNPKVETQVQIQKQDSIIYYNSGEYDRLLQEEINLYGTYRRYEDSQLTAKKTYRARRDTILRVDTIHKVDVITLVNSCDSVIEADSLVINNLQEQINIKDEKTNNLQEVVVAYEQKSKLLSEEINTLNVEKKKLEKQKKRRTSAFIVSSSVAILSTFVISILL*
Ga0153702_117923	F082704	N/A	MAQSKTKKGICVYLHKDLWNEIDEKRGENSRNSFLSEAIKFSLKFYVEESKVKLK*
Ga0153702_117924	F019140	N/A	MKKPQLHESLKITKDREHEIVNLIAAYFQQGKILGDILLELSQRKDMNAKEKIYLALMIGSLMNKSNEDGAKQN*
Ga0153702_117929	F012871	N/A	MPTITQRVDRAERESAFVADHDLPTFVKLCSKVCAMYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFELNAANELQKKCEHFGALSISFIGDVLTYYKPYRDKANLQIQKEIAELKDQECKKIKEKEMAVNDDSWKRMLAEDIESFKNGKYTVIEIRAVSIMRWLEEAKYITAETFTDEEYKLCKARARKNIFFEQSLNKPMVERMSDRKRQLLKESIHFEGMRELYKLYLKKQTLA
Ga0153702_117931	F091602	N/A	MKSDLTFCPSCESKELGERVDQILRDQNLQDWDSAYEFVDDEGEIKVCFDCQEWDDADDDAKGEGWD*
Ga0153702_117933	F049635	N/A	MNKQIYSTPFGRLVKINFKTLTNFKTALRISDPTARLYVAHPERMRIKDFNNICLHTGLSRDEVFSTFTPTKLINEEND*
Ga0153702_117936	F045753	N/A	MYCPKINYCFNDNDILSLNKRIKAIALNYHEEHTGWFDVGKNEHLVFIDEQENMFLIYLRGRFFRRDEPGFDLEFVRLEKDKISFDFEIKMFDDHI*
Ga0153702_11794	F028175	N/A	MAITIEDQPYQYTPVGQRLMIVCRSTNVANAGFRFVFDFGAFQVNVQPNAQNKGMLDLAPIFREQLQHDAGAASESNIAIENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQISDGYKPNPNTRYALDGITKYAMSERTTDTHKWGEAAGRGLSSEWVYIPTRLADFGQLYSISNNGLLVDNVANNLYLTTYDNNDEIIDATNYTIPNEDLNSVSRLGAYPANLINDGVDFTNVKYYTIQAGEEIAFPIYTPASRVYCFYLIADDCRYNNVRLGWSNTVGGVDYFNFTKKSELSYNYDRKQYQKVVGTYNESTFDFNTWDRGITERYVNTTKGLQINSDWVSVGEFQLLQTLCRSNDVFIINNDGTSTPVLVDAPNFVIRDERYSKLYNVTLNLKYSQPVGL*
Ga0153702_11799	F041764	N/A	MKIEAGGFLKLELFNNDANVFLNALVKITNENNKMGFKTYGLTEDEAKVLNAILDSLE*