Scaffold Ga0153702_1019

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1019
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 57354
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (86.96%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → Methylotenera mobilis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021264	Metagenome	219	Y
F096903	Metagenome	104	Y
F100715	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_101912	F096903	AGGAG	MIATTAYILINTIVAFGEVTQTTTIFADKPSCESAATRQDFVLKSLEVHGRWNLTCHPYSLTEEKK*
Ga0153702_101920	F100715	GGTGG	MTRLECMTRLTMAQKNKKELKKIKLQLLKEIQQLKLMLRALEEEEQWVN*
Ga0153702_101923	F021264	GAGG	MNEIFLATLTLTISFLTSETTIDKKGHTTQVERIAYTTSVLPYETMLACMNAKEEYGFAFGAYQMSKRPARVITAICNDVKTGTVQ*