Basic Information | |
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Taxon OID | 3300011337 Open in IMG/M |
Scaffold ID | Ga0153702_1019 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 57354 |
Total Scaffold Genes | 69 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 60 (86.96%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → Methylotenera mobilis | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Paju, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.6518694 | Long. (o) | 126.72164723 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021264 | Metagenome | 219 | Y |
F096903 | Metagenome | 104 | Y |
F100715 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153702_101912 | F096903 | AGGAG | MIATTAYILINTIVAFGEVTQTTTIFADKPSCESAATRQDFVLKSLEVHGRWNLTCHPYSLTEEKK* |
Ga0153702_101920 | F100715 | GGTGG | MTRLECMTRLTMAQKNKKELKKIKLQLLKEIQQLKLMLRALEEEEQWVN* |
Ga0153702_101923 | F021264 | GAGG | MNEIFLATLTLTISFLTSETTIDKKGHTTQVERIAYTTSVLPYETMLACMNAKEEYGFAFGAYQMSKRPARVITAICNDVKTGTVQ* |
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