Scaffold Ga0153703_1711

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1711
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10406
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F012219	Metagenome / Metatranscriptome	282	Y
F024556	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_171110	F024556	AGG	MALYGSKAVAAGVSAAMSAALGFLTMPLKGTGINALKVGK*
Ga0153703_171111	F012219	AGGTGG	MNLQNFRIEKEPAPSTDWRVFGDIYDQSGNLLGTFGQDGTSVNIWWVTQDEAFQSRIVEQFAIVMAQQIVAGTAE*
Ga0153703_171113	F001733	AGGA	MMKQISVSRLLIIVLIAFVASFATVFGDGVRTAEAHDISELGAVMALYGSKAVAAGVSAAMSAALGFLTMPFKGTGVNALKVGK*
Ga0153703_171114	F012219	AGGTGG	MNLQNFRIEKEPAPSTDWRVFGDIEDDNGNILGTFGQDGTSVNVWWVTQDEGFQYSIVNQFVVVMAQQIASGDAE*